Thanks Jim, We did sign the jar file, and it doesn't work for us. We are trying to figure out a way, so user can get the consense sequence without moving to the full version (which kind of leave our site where we have some javascript code to interact with jalview).
Regards, Wei _____ From: Jim Procter [mailto:[email protected]] To: [email protected] Sent: Thu, 28 Jun 2012 12:12:45 -0400 Subject: Re: [Jalview-discuss] Question about Copy Consensus Sequence Hello Wei On 27/06/2012 17:21, Wei Jen wrote: Our web site using the applet version of the jalview. We have problem using the feature "Copy Consensus Sequence" We can see it by right clicking on the "Consensus" Label which bring up the context menu, and it's the last option. After we choose that option, there is nothing get transfer to the clipboard, is there a way to get around it? Not really. Since JalviewLite is an unsigned applet, it doesn't have access to the system clipboard (http://docs.oracle.com/javase/tutorial/deployment/applet/security.html), and the 'Copy Consensus Sequence' function just copies the sequence to an internal clipboard (type shift+ctrl+V and you will see a new alignment window appear with the consensus sequence). I'm not sure if the consensus sequence will be copied to the system clipboard if you sign the jalview applet jar then it might 'just work', but that's fairly unlikely. Jim.
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