Hi Ray.

On 31/07/2012 10:25, Raymond Moran wrote:
> We need a way of the user being able to create an image out of their 
> results (html)(basically sequence is colored from start to stop 
> prediction sites withing fasta sequences), an even edit them to their 
> liking.  Of course screenshots could be taken, however this is not 
> ideal and not flexible.  Could Jalview be stretched to do this.  I 
> have tried doing it with a sequence feature file, but to no avail.  
> Can you offer any guidance ?
Could you let me know what your ideal situation is here ?  In principle, 
sequence features are the way in which you would highlight TF-binding 
site regions predicted by your tool, and the desktop application would 
allow them to make figures easily. Perhaps you could send me a sample 
result set from your tool and let me know how you'd like your users to 
access the results (web or via the jalview desktop application, etc...).

Jim.

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