Hello everyone, While it was running smoothly in Lion, it seems that upon arrival of Mac OSX Mountain Lion, Jalview become unusable - or let's say "not easily usable" - for new Mac OSX users. I have tried installation of both latest version and the development version using Java Web Start, InstallAnywhere and compiling from source code and they both resulted in same errors, detailed below.
Firstly, Java web start (jalview.jnlp) resulted with a security issue, that I couldn't be able to resolve. Even though I added the certificate to trusted list, Java still blocks the web start for jalview. Screenshot 1 ( http://i.imgur.com/WUk9b.png ) and screenshot 2 ( http://i.imgur.com/olefs.png ) may be helpful in understanding the situation. Second, I have downloaded the InstallAnywhere version (install.zip, Mac OSX version in website), however, this time i have stuck with the "damaged" package error (Screenshot 3: http://i.imgur.com/DiUj2.png ). I have tried unzipping file with bundled "Archive Utility" and UnZip 5.82 separately. The latter one have not provided the same error, though, it didn't run either. And as a last result, I have downloaded the source code (jalview_2_7.tar.gz). Followed the instructions and make an ant build, and ant makeApplet build. Afterwards, I have tried running the produced applet with and without the instructed parameters. Both give the same "Exception in thread 'main' java.lang.NoClassDefFoundError: jalview/jar" error, and yet I could not be able to solve. Full terminal outputs can be found here: http://pastebin.com/1fWAm3k3 So, I don't know what else can I try to make it work and any suggestions on this matter will be very much appreciated. Thank you for your time! Sincerely, Ahmet Sinan Yavuz _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
