Dear Jim many thanks for your prompt help.
I get a nice tree with a local installation of Jalview: Jalview.exe -open /home/cgille/m2/strapOut/jalview/align.msf -tree /home/cgille/m2/strapTmp/clustalw_2.1/0/named_input.dnd But there is no tree with Webstart: http://www.jalview.org/services/launchApp?open=C%3A%5Chome%5Ccgille%5Cm2%5CstrapOut%5Cjalview%5Calign.msf&features=C%3A%5Chome%5Ccgille%5Cm2%5CstrapOut%5Cjalview%5Cfeatures.gff&tree=file%3A%2FC%3A%2Fhome%2Fcgille%2Fm2%2FstrapTmp%2Fclustalw_2.1%2F0%2Fnamed_input.dnd Nevertheless, the gff sequence features are shown. That works very well! Is the web variable tree=url_of_dnd correct? Or should this parameter be encoded differently? Many thanks christoph _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
