Hi! I'm mostly using Jalview to view alignments.
Normally, when I open one of my alignment files (.afa or .jar), I get a consensus sequence at the bottom and the alignment is automatically coloured by conservation. But weirdly, sometimes when I open the same files, I don't get any consensus sequence (and hence no coloration). Can anyone tell me why? I'm not changing the settings! Sometimes, restarting the program will solve the problem (until it appears again a few files later). But not always. I have also found no pattern as to after how many files this happens (I usually close files before opening the next, so it shouldn't be a memory problem, right?). Any idea what's happening and what I can do to prevent it? The settings I think are relevant for this: Preferences => Visual (Open New Alignment) I have ticks in - Show Annotations - Quality - Conservation - Consensus - Show group: consensus - Consensus: Histogram I'd be really grateful for any advise. Thank you! Lastalda _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
