Hi Jim > The next test is whether the JABAWS services are functional. If you > click on the services status link you should be able to see if > everything is working. > > If all the above work, and you still cant get Jalview to connect, then: > 1. open the Jalview console window and hit clear. > 2. Hit the 'refresh services' button on the webservices config panel - > send the contents of the console window to me directly.
Everything works on the website services status link cleared console. I have a webservices config panel (in the subwindow is the only one i can find) but i dont see a refresh services option or button or any obvious way to navigate to anywhere that may have such button. my drop-down menu from web service has alignment, secondary structure, (protein disorder), Anlaysis , (Envision 2), Fetch DB references. As for my other question, I am a benefiteer at the present, so theres no chance of making onto your course sadly, not with a PhD and the law as it stands, unless you know of any jobs. Kind regards James ----- Original Message ----- From: <[email protected]> To: <[email protected]> Sent: Saturday, November 23, 2013 12:00 PM Subject: Jalview-discuss Digest, Vol 68, Issue 8 > Send Jalview-discuss mailing list submissions to > [email protected] > > To subscribe or unsubscribe via the World Wide Web, visit > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss > or, via email, send a message with subject or body 'help' to > [email protected] > > You can reach the person managing the list at > [email protected] > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Jalview-discuss digest..." > > > Today's Topics: > > 1. Re: Fw: web service config prob (Jim Procter) > 2. Re: annotations: conservation, quality and consensus (Jim Procter) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Fri, 22 Nov 2013 15:14:34 +0000 > From: Jim Procter <[email protected]> > Subject: Re: [Jalview-discuss] Fw: web service config prob > To: [email protected] > Message-ID: <[email protected]> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > Hi James - sorry to hear you are having problems! > > Can you browse the JABAWS web site on your computer's browser ? > > http://www.compbio.dundee.ac.uk/jabaws/ > > The next test is whether the JABAWS services are functional. If you > click on the services status link you should be able to see if > everything is working. > > If all the above work, and you still cant get Jalview to connect, then: > 1. open the Jalview console window and hit clear. > 2. Hit the 'refresh services' button on the webservices config panel - > send the contents of the console window to me directly. > > Hear from you soon ! > Jim > > > ------------------------------ > > Message: 2 > Date: Fri, 22 Nov 2013 17:52:23 +0000 > From: Jim Procter <[email protected]> > Subject: Re: [Jalview-discuss] annotations: conservation, quality and > consensus > To: [email protected] > Message-ID: <[email protected]> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > Hi again.. > > James RF Sutton wrote: >> Does anyone else experience the software crash when you try to click >> on quality or consensus to adjust? > Could you follow our FAQ re reporting this as a bug ? > http://www.jalview.org/faq#bug > >> it would be great to have a way to simply show conservation alone- >> but i am not finding a way to do it, could anyone point this out pls > you can configure this in Jalview's preferences (the 'Visual') tab. > > Jim. > ps. these are exactly the kind of details that we will be covering in > our Jalview workshop - registration is still open for another week or so! > > > > ------------------------------ > > _______________________________________________ > Jalview-discuss mailing list > [email protected] > http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss > > > End of Jalview-discuss Digest, Vol 68, Issue 8 > ********************************************** _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
