Re: [Jalview-discuss] FW: Returned mail: see transcript for details

Fri, 14 Feb 2014 02:11:37 -0800

Hello Jochen.

In the current versions of Jalview, it is not possible to change the colours of the base pair/sheet/helix symbols. However, the latest development build for Jalview visualises pseudoknots with different arrow colours, and also supports pair colouring according to Leontis-Westoff interaction if PDB structures are available.

It is possible to specify a label and label colour independently of the secondary structure, though...

Just right-click on the region and use the 'Colour' option.

Jim.



On 14/02/2014 09:34, Jochen Baßler wrote:
Dear Jim,

I have a question for the usage of jalview, but I was not able to reach you with the [email protected] email address.
( I have a membership in the Jalview mailing list, but I´ve got the error that you see below)

Beside this technical problem, my jalview question is the following: I would like to know, how to change colors in the annotations below the alignment, where I have marked helices and sheets. In detail I would like to change the color of the Helix and/or sheet label. This should help to highlight important features. 
But I found only how to change the color of the associated text. 
(Especially, if you have a RNA, you have only one color for RNA-helix.)

Thanks a lot for your help + best wishes from heidelberg

Jochen Baßler

From: Mail Delivery Subsystem <[email protected]>
Date: Friday, 14February, 2014 10:26 AM
To: J B <[email protected]>
Subject: Returned mail: see transcript for details

The original message was received at Fri, 14 Feb 2014 10:26:09 +0100
from cyrus-portal.urz.uni-heidelberg.de [129.206.100.176]

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Date: Fri, 14 Feb 2014 10:27:08 +0100
Subject: Change colour of helices, sheets in annotation line
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Thread-Topic: Change colour of helices, sheets in annotation line
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