Hi All, When I have a whole sub section of an alignment selected.Then I go to Selection--Output to Textbox- Fasta. The resulting Fasta file has the sequence start stop feature for the whole sequence and not for the selected region.
So for example If I selected a region 60-80 of a giant alignment with sequences of different lenghts. Previously in Jalview I would have the output say >seq1| gi 123456 60-80 AGSGA-GAGGGA.... >seq1 | gi 1244565 66-86 AGSGA-GAGGGA But now the output says >seq1| gi 123456 *1-887* AGSGA-GAGGGA >seq1 | gi 1244565 *1-1021* AGSGA-GAGGGA Any ideas how I can get the Fasta output to have the start stop for the selection. Or maybe I need to use a group and output to a new alignment? What I want is to realign a sub-section of an alignment in a new Jalview window and preserve the residue numbers Sorry I dont know how to accomplish this. Thanks Hari
_______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
