Hi Jim, Thanks for a reply.
I could open the URL in browser - contains .jar files, example foldor etc. Please let me know if there is anything else that you want me to run or send. Ganesh ________________________________________ From: Jim Procter [[email protected]] on behalf of Jim Procter [[email protected]] Sent: 07 June 2017 00:01 To: Ganesh Phad; Mungo Carstairs (Staff) Cc: [email protected] Subject: Re: Re: [Jalview-discuss] Jalview.jnlp on ubuntu Hi Ganesh - these errors suggest you had no active net connection, so javaws couldn't download Jalview's jars. javaws needs to launch Jalview once before it can be locally cached (and launched without network afterwards). Can you open http://www.jalview.org/builds/release/webstart in your browser ? if so, then we'll need to do some more digging. Jim. On 05/06/2017 15:19, Ganesh Phad wrote: > Hi Mungo, > > I’ve not been able to run jalview.jnlp on ubuntu 16.04 LTS > > Java version: openjdk version "1.8.0_92" > > It gives following error when I tried to launch app - javaws > jalview.jnlp (it was working before after installing package > called 'icedtea-netx’) > > Could you please have a look and let me know how I can run the jalview > again. > > Thanks, Ganesh > > Error message - > > JAR http://www.jalview.org/builds/release/webstart/jalview.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/JGoogleAnalytics_0.3.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/Jmol-14.6.4_2016.10.26.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/VARNAv3-93.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/activation.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/apache-mime4j-0.6.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/axis.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/biojava-core-4.1.0.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/biojava-ontology-4.1.0.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/castor-1.1-cycle-xml.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/commons-codec-1.3.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/commons-discovery.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/commons-logging-1.1.1.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/groovy-all-2.4.6-indy.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/htsjdk-1.133.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/httpclient-4.0.3.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/httpcore-4.0.1.jar not > found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/httpmime-4.0.3.jar not > found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/jalview_jnlp_vm.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/java-json.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jaxrpc.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/jdas-1.0.4.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jersey-client-1.19.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jersey-core-1.19.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jersey-json-1.19.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-http-9.2.10.v20150310.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-io-9.2.10.v20150310.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-server-9.2.10.v20150310.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-util-9.2.10.v20150310.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jfreesvg-2.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jhall.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/json_simple-1.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jsoup-1.8.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jsr311-api-1.1.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jswingreader-0.3.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/log4j-to-slf4j-2.0-rc2.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/mail.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/miglayout-4.0-swing.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/min-jabaws-client-2.1.0.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/quaqua-filechooser-only-8.0.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/regex.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/saaj.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/servlet-api-3.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/slf4j-api-1.7.7.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/slf4j-log4j12-1.7.7.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/spring-core-3.0.5.RELEASE.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/spring-web-3.0.5.RELEASE.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/vamsas-client.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/wsdl4j.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/xercesImpl.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/xml-apis.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jalview.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/JGoogleAnalytics_0.3.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/Jmol-14.6.4_2016.10.26.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/VARNAv3-93.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/activation.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/apache-mime4j-0.6.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/axis.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/biojava-core-4.1.0.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/biojava-ontology-4.1.0.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/castor-1.1-cycle-xml.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/commons-codec-1.3.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/commons-discovery.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/commons-logging-1.1.1.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/groovy-all-2.4.6-indy.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/htsjdk-1.133.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/httpclient-4.0.3.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/httpcore-4.0.1.jar not > found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/httpmime-4.0.3.jar not > found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/jalview_jnlp_vm.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/java-json.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jaxrpc.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/jdas-1.0.4.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jersey-client-1.19.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jersey-core-1.19.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jersey-json-1.19.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-http-9.2.10.v20150310.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-io-9.2.10.v20150310.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-server-9.2.10.v20150310.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/jetty-util-9.2.10.v20150310.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jfreesvg-2.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jhall.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/json_simple-1.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jsoup-1.8.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jsr311-api-1.1.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/jswingreader-0.3.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/log4j-to-slf4j-2.0-rc2.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/mail.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/miglayout-4.0-swing.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/min-jabaws-client-2.1.0.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/quaqua-filechooser-only-8.0.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/regex.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/saaj.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/servlet-api-3.1.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/slf4j-api-1.7.7.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/slf4j-log4j12-1.7.7.jar not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/spring-core-3.0.5.RELEASE.jar > not > found. Continuing. > JAR > http://www.jalview.org/builds/release/webstart/spring-web-3.0.5.RELEASE.jar > not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/vamsas-client.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/wsdl4j.jar not found. > Continuing. > JAR http://www.jalview.org/builds/release/webstart/xercesImpl.jar not > found. Continuing. > JAR http://www.jalview.org/builds/release/webstart/xml-apis.jar not > found. Continuing. > netx: Initialization Error: Could not initialize application. (Fatal: > Initialization Error: Unknown Main-Class. Could not determine the main > class for this application.) > net.sourceforge.jnlp.LaunchException: Fatal: Initialization Error: Could > not initialize application. The application has not been initialized, > for more information execute javaws from the command line. > at net.sourceforge.jnlp.Launcher.createApplication(Launcher.java:813) > at net.sourceforge.jnlp.Launcher.launchApplication(Launcher.java:532) > at net.sourceforge.jnlp.Launcher$TgThread.run(Launcher.java:936) > Caused by: net.sourceforge.jnlp.LaunchException: Fatal: Initialization > Error: Unknown Main-Class. Could not determine the main class for this > application. > at > net.sourceforge.jnlp.runtime.JNLPClassLoader.initializeResources(JNLPClassLoader.java:704) > at > net.sourceforge.jnlp.runtime.JNLPClassLoader.<init>(JNLPClassLoader.java:285) > at > net.sourceforge.jnlp.runtime.JNLPClassLoader.createInstance(JNLPClassLoader.java:357) > at > net.sourceforge.jnlp.runtime.JNLPClassLoader.getInstance(JNLPClassLoader.java:429) > at > net.sourceforge.jnlp.runtime.JNLPClassLoader.getInstance(JNLPClassLoader.java:403) > at net.sourceforge.jnlp.Launcher.createApplication(Launcher.java:805) > ... 2 more > > —————————————————————— > Ganesh E Phad > Department of Microbiology, Tumor and Cell Biology (MTC) > Karolinska Institutet > Nobels väg 16 | SE-171 77 > Stockholm | Sweden > Office: +46 8 524 86943 > Mobile: +46 76 70 53515 > Email: [email protected] <mailto:[email protected]> > >> On 8 Feb 2017, at 11:17, Mungo Carstairs (Staff) >> <[email protected] <mailto:[email protected]>> wrote: >> >> Hi Ganesh, >> >> Glad to hear that is resolved for you. >> >> And for any other readers, yes that was a typo in my last post, should >> have read >> >> javaws jalview.jnlp >> >> _not_ javawas >> >> Mungo >> >> Email signature >> >> University of Dundee shield logo <http://uod.ac.uk/sig-home> >> *Mungo Carstairs* >> Jalview Computational Scientist >> The Barton Group >> Division of Computational Biology >> School of Life Sciences >> University of Dundee, Dundee, Scotland, UK >> www.jalview.org <http://www.jalview.org/> >> www.compbio.dundee.ac.uk <http://www.compbio.dundee.ac.uk/> >> [email protected] <mailto:[email protected]> >> University of Dundee Facebook <http://uod.ac.uk/sig-fb> University of >> Dundee Twitter <http://uod.ac.uk/sig-tw> University of Dundee LinkedIn >> <http://uod.ac.uk/sig-li> University of Dundee YouTube >> <http://uod.ac.uk/sig-yt> University of Dundee Instagram >> <http://uod.ac.uk/sig-ig> University of Dundee Snapchat >> <http://uod.ac.uk/sig-sc> >> *We're Scottish University of the Year again!* >> <http://uod.ac.uk/sig-strapline> >> The Times / Sunday Times Good University Guide 2016 and 2017 >> >> ------------------------------------------------------------------------ >> *From:* Ganesh Phad <[email protected] <mailto:[email protected]>> >> *Sent:* 07 February 2017 17:08:11 >> *To:* Mungo Carstairs (Staff) >> *Cc:* [email protected] <mailto:[email protected]> >> *Subject:* Re: [Jalview-discuss] Jalview.jnlp on ubuntu >> >> Hi Mungo, >> >> Thanks for your reply. >> I managed to the jalview.jnlp after installing the package called >> 'icedtea-netx’. >> >> Java - version is below. >> >> openjdk version "1.8.0_92" >> OpenJDK Runtime Environment (Zulu 8.15.0.1-linux64) (build 1.8.0_92-b15) >> OpenJDK 64-Bit Server VM (Zulu 8.15.0.1-linux64) (build 25.92-b15, >> mixed mode) >> >> Thanks, Ganesh >> >>> On 7 Feb 2017, at 17:54, Mungo Carstairs (Staff) >>> <[email protected] <mailto:[email protected]>> wrote: >>> >>> Hi Ganesh, >>> >>> Sorry to hear you are having problems. >>> If you open a command line prompt in the download folder and type >>> >>> javawas [filename].jnlp >>> >>> do you see any error message? >>> >>> Also, what does >>> java -version >>> report? >>> >>> Thanks, >>> >>> Mungo >>> >>> Email signature >>> >>> University of Dundee shield logo <http://uod.ac.uk/sig-home> >>> *Mungo Carstairs* >>> Jalview Computational Scientist >>> The Barton Group >>> Division of Computational Biology >>> School of Life Sciences >>> University of Dundee, Dundee, Scotland, UK >>> www.jalview.org <http://www.jalview.org/> >>> www.compbio.dundee.ac.uk <http://www.compbio.dundee.ac.uk/> >>> [email protected] <mailto:[email protected]> >>> University of Dundee Facebook <http://uod.ac.uk/sig-fb> University of >>> Dundee Twitter <http://uod.ac.uk/sig-tw> University of Dundee >>> LinkedIn <http://uod.ac.uk/sig-li> University of Dundee YouTube >>> <http://uod.ac.uk/sig-yt> University of Dundee Instagram >>> <http://uod.ac.uk/sig-ig> University of Dundee Snapchat >>> <http://uod.ac.uk/sig-sc> >>> *We're Scottish University of the Year again!* >>> <http://uod.ac.uk/sig-strapline> >>> The Times / Sunday Times Good University Guide 2016 and 2017 >>> >>> ------------------------------------------------------------------------ >>> *From:* [email protected] >>> <mailto:[email protected]> >>> <[email protected] >>> <mailto:[email protected]>> on behalf of Ganesh >>> Phad <[email protected] <mailto:[email protected]>> >>> *Sent:* 07 February 2017 16:28:43 >>> *To:* [email protected] <mailto:[email protected]> >>> *Subject:* [Jalview-discuss] Jalview.jnlp on ubuntu >>> >>> Hi, >>> >>> I want to use Jalview on Ubuntu 16.04. I'm trying to open >>> jalview.jnlp downloaded via firefox, but nothing happens when I click >>> on the file. How I can launch the jalview.jnlp? >>> I've used jalview.jnlp before on older version of ubuntu and could >>> open the program just by a double click. >>> >>> Thanks for any help! >>> >>> Ganesh >>> >>> The University of Dundee is a registered Scottish Charity, No: SC015096 >> >> >> The University of Dundee is a registered Scottish Charity, No: SC015096 > -- ------------------------------------------------------------------- Dr JB Procter, Jalview Coordinator, The Barton Group Division of Computational Biology, School of Life Sciences University of Dundee, Dundee DD1 5EH, UK. +44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk _______________________________________________ Jalview-discuss mailing list [email protected] http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
