Hi Jalview team,
Thanks for your great tool. I am trying to do a batch analysis for several alignments, thus I need the command line.
I would like to define a group and to show the consensus logo of this group, but not the logo of the complete alignment. Then I want to hide this group, define the consensus sequence as reference and show the differences to the reference in the remaining sequences.
I tried for quite some time, but I failed already at the step to get a group logo from an annotation file. Is there a way to do this?
Many thanks
Jens
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