Though I notice another gui Preference, to specify a fixed id width, doesn't work: it is saved against "FIGURE_USERIDWIDTH", but the code looks for "FIGURE_FIXEDIDWIDTH" 😞.
mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> g.m.carsta...@dundee.ac.uk<mailto:g.m.carsta...@dundee.ac.uk> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: jalview-discuss-boun...@jalview.org <jalview-discuss-boun...@jalview.org> on behalf of James Procter <j.proc...@dundee.ac.uk> Sent: 21 February 2018 09:06:06 To: Martin Raden; jalview-discuss@jalview.org Subject: Re: [Jalview-discuss] Jalview properties file : documentation ? On 20/02/2018 20:27, Martin Raden wrote: .. now you got me. I eventually never opened the GUI so far! ;) the whole setup is done by a colleague and I am "only" responsible to get a backend pipeline working with his ideas. That's enough of a use case for us to run with! We do plan to have Jalview document its properties file.. and CLI only access is something we should factor in (--propertieshelp ?). I guess we could also embed comments in the properties file. and since I am always intrigued, I was wondering what might be customizable, since he just mentioned this properties file today, and didnt find any documentation. :D maybe one: is there a possibility to increase the width of the leftmost region in which the alignment/plot labels are plotted? our labels are cut of to suffixes in the svg output. :) Absolutely ! In the properties GUI's 'Output' pane there's an 'Automatically adjust ID Width' checkbox. That translates to FIGURE_AUTOIDWIDTH=true http://rna.informatik.uni-freiburg.de/trunk/DownloadFile.jsp?jobID=6038639&toolName=CopraRNA&fileNameOrType=evo_align_img/1_mRNA.svg You might find: RIGHT_ALIGN_IDS=true Also useful :) Hope it helps ! Jim. The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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