Hi JC - :) Thanks for the interesting email ! On 03/07/2018 03:27, Juan Carlos Sanchez wrote: > I noticed that when having stop sign in an aminoacid sequence “*” , > when using MUSCLE web service to realign the sequences it will be > converted to a gap “-“ Ah - that sounds like Muscle is just treating '*' as a gap. > I know is not common to align with stops, but in some cases I think it > happens.It might be an issue of MUSCLE itself, but I thought it could > be interesting to share this bug here. What would be the ideal behaviour ?
We could, for instance, have Jalview reinsert the '*' in the alignment that is returned from Muscle... Jim. -- ------------------------------------------------------------------- Dr JB Procter, Jalview Coordinator, The Barton Group Division of Computational Biology, School of Life Sciences University of Dundee, Dundee DD1 5EH, UK. +44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk
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