Hi,
I am wondering if we can extract the score to do the colour map from an
alignment?
For example, if we colour the alignment with Blosum62 (for example) and we
select Colour by conservation, with a threshold of 30,
we will get column that are white, and some columns with various level of
blue/purple.
And some outlier AA in those column will be kept still white or less bright. I
guess this is based from the AMAS method?
Can we retrieve this information directly from Jalview and output the scores as
a 2d matrix (genes x positions)?
Or is there a tool to compute such conservation score at the individual amino
acid level?
Thanks,
Romain
_______________________________________________
Jalview-discuss mailing list
Jalview-discuss@jalview.org
http://www.compbio.dundee.ac.uk/mailman/listinfo/jalview-discuss
