Hello, I'm trying to create a visual 2D map of my structure and annotate its secondary structure elements. First I need to a good visual representation of the sequence and the ss elements that are there. Are they going to be generated by DSSP or read from my structure header?!
Hopefully, Jalview can actually annotate the ss elements as well in a numerical order, like H1, S1, S1', H2,...etc. Are there guidelines regarding how close two ss elements should be to be annotated with the same number followed by prime? If not I can do it manually! Can I do this in Jalview? How? Regards.
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