Hi Nail, I'm just copying the question to the discussion list so it is visible to the whole team / community, so the best person can get back to you. Please bear with us!
Best regards, mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> g.m.carsta...@dundee.ac.uk<mailto:g.m.carsta...@dundee.ac.uk> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: Nail Besli <beslin...@gmail.com> Sent: 24 March 2020 12:12 To: Mungo Carstairs (Staff) <g.m.carsta...@dundee.ac.uk> Subject: Re: [Jalview-discuss] load annotations or future file Hi, I would like to align with three protein sequences to detect the conserved domains using CATH. How can I do it? Nail On Tue, Jul 2, 2019 at 11:48 AM Mungo Carstairs (Staff) <g.m.carsta...@dundee.ac.uk<mailto:g.m.carsta...@dundee.ac.uk>> wrote: Hello Nail, I am sorry to hear you are having problems. An annotation or features file should be plain text format, not JSON. Please see the help pages in the application or at http://www.jalview.org/help/html/features/annotationsFormat.html http://www.jalview.org/help/html/features/featuresFormat.html The DAS service registry was unfortunately discontinued in 2015 (see https://www.dasregistry.org/), and DAS options will be removed in the forthcoming release of Jalview. However you can still fetch annotation from PDB, Uniprot and other EBI databases using the menu option "Web Service | Fetch DB References". I hope this helps. If you are still having problems, please let us know the version of Jalview you are running, any error messages seen ("Tools | Show Java Console"), and if possible email me the file(s) that fail to load. Best regards, Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> g.m.carsta...@dundee.ac.uk<mailto:g.m.carsta...@dundee.ac.uk> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: jalview-discuss-boun...@jalview.org<mailto:jalview-discuss-boun...@jalview.org> <jalview-discuss-boun...@jalview.org<mailto:jalview-discuss-boun...@jalview.org>> on behalf of Nail Besli <beslin...@gmail.com<mailto:beslin...@gmail.com>> Sent: 01 July 2019 20:07:46 To: jalview-discuss@jalview.org<mailto:jalview-discuss@jalview.org> Subject: [Jalview-discuss] load annotations or future file I just would like to load annotations or future file with *.json. Every single time, it gives error loading file. Also, I showed `https://www.ebi.ac.uk/pdbe/pdbe-kb`<https://www.ebi.ac.uk/pdbe/pdbe-kb> as a resource to load the sequence future is das settings. But it doesn't work. pls help me with this problem Best The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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