Here's the JRE bug that can corrupt the Lucene index when a large merge takes place:
http://bugs.sun.com/bugdatabase/addVote.do?bug_id=6707044
If you all can vote for it, it may help speed the process along ;)
Here's the corresponding Lucene issue:
https://issues.apache.org/jira/browse/LUCENE-1282
Mike
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