Well your code looks fine I've tested it and it doesn't come out in capital 
letters, after comparing your code against mine I noticed that I've used a 
Checksum instead of using a for loop and that worked for me.

Here are some snippets of my Code

public ChangeToUpperCaseInputStream(InputStream in, Checksum cksum)
    {
        super(in);
        this.cksum = cksum;
    }


And this:

public int read(byte[] b) throws IOException 
    {
        int len;
        len = in.read(b, 0, b.length);
        if (len != -1) {
            cksum.update(b, 0, len);
        }
        return len;
    }

I've also used Checksum in the CheckedOutputStream and the 
CheckedInputStream

And I've also created a Checksum class.


I think that might be the solution to your problem, I've got almost 
everything the same as you only the Checksum is different.


Goodluck!
 

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