You need to use the the unix diff and patch utilities. If you are running 
windows, use cygwin as your command shell. It contains these utils.

1) checkout the latest Branch_4_0
   
    cvs co -r Branch_4_0 jboss-4.0

2) make a copy of it

3) make your changes to the webservices/samples

4) run the samples test suite

5) use diff to create the patch file 

6) now check your patch by applying it to your clean copy

7) run the samples test suite on the patched version

8) submit the patch file to sourceforge

It's only hard the first time ;-)

good luck

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