I did some further checking and it seems that if a (partial/incomplete) jboss.xml file is present then jboss uses only those configurations found in the jboss.xml file and fails to find the default configurations.
 
org.jboss.ejb.ContainerFactory.java#381
 
       conf =  jar.getContainerConfigurations().getContainerConfiguration(DEFAULT_STATEFUL_CONFIGURATION);
returns null

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