Using:
* Ganymede SR1
* JBoss Tools 3 Beta 1 (more specifically "JBoss AS Tools" 
2.0.0.Beta1-R200810311334).

Searched the forum, but haven't found anyone with my exact same issue.

I created a new "Dynamic Web Project" and a regular "Java" project in Eclipse.  
I then created a new "WAR" archive in the "Project archives" pane.  I select 
the war archive and select "New archive --> JAR" in the war archive's 
WEB-INF/lib directory.  This adds the jar as an embedded package within the 
WAR.  I can manually publish to the server with no problem (both WAR and JAR 
projects are set to expanded deployment).

So, if I modify index.html (for example) in my web project, the change is 
detected and it is deployed to the server successfully.  However, if I change a 
Java source file in the JAR project, the change is not detected (and therefore, 
not deployed).  The fileset configured for the JAR archive is the classes 
output directory of the JAR's Eclipse project.  I verified that classes were 
indeed being generated to this directory.

I did a similar test using an EAR archive with an embedded WAR archive.  
Changes made to the fileset on the EAR would auto-deploy, but changes made to 
the embedded WAR package were not.  So, it seems as though something is not 
detecting changes to any child archive of the base archive type.

Any help on this is much appreciated.

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