May or may not work for others, but I was just able to work around this issue 
by turning off EAR classloading isolation (Jboss 5.1.0 JDK6).  After setting 
the following property to false, the quartz resource adapter can now load my 
ejb and that ejb's dependencies are properly injected.  There are obviously 
other classloading implications, but if it's an option...

in jboss/server/all/deployers/ear-deployer-jboss.beans.xml:
<bean name="EARClassLoaderDeployer" 
class="org.jboss.deployment.EarClassLoaderDeployer">
  |       <property name="isolated">false</property>
  |    </bean>

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