I have resolved this issue. I didn't need to use @JndiName or do anything else 
special (in any case, thanks Gavin). I'm not entirely sure what the problem was 
but it went away when I recreated my environment from scratch.

My problem was caused by beans not appearing at the root of the JNDI context 
(for some unknown reason). I do recommend looking at your JNDI tree if you have 
a similar issue. If using Embeddable EJB see 
http://wiki.jboss.org/wiki/Wiki.jsp?page=EmbeddableJNDIView.

So, as far as I can see there are no issues with having multiple EJB JARs 
within a Embeddable EJB 3.0 application, so long as you get the JNDI paths 
correct (as in Seam documentation).

It's also important to remember to have META-INF/ejb-jar.xml and 
seam.properties within the JAR. You'll also probably need to explicitly define 
each Entity (using class elements) in your persistence.xml.

Dig.[/url]

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