This is an equally valid way of doing it (and neat as well - avoids exposing 
your id's to the world) but I guess it's tricky to get working.

My best guess as to why it fails from what you've said is that by passing the 
instance through the datamodel like that it has become unmanaged so cannot be 
removed - you can check this by calling entityManager.contains().  Setting by 
Id rather than instance might just work (use it with my.getId rather than 
rowIndex).

And beware of the fact that a remove won't remove the entity from memory - it 
just detaches it from the persistence context.

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