As referenced here:

http://wiki.jboss.org/wiki/Wiki.jsp?page=JBossWithJDK6

anonymous wrote : 
  | Please note that JDK6 support is purely experimental in JBoss AS 4.2.x
  | 

As for JBoss5
http://wiki.jboss.org/wiki/Wiki.jsp?page=JBossVsJavaJDKVersionMatrix

So, we do not officially support 1.6 for JBoss 4.2.x or for JBoss5. 

As for the warning message, this is simply informing you that the isolation 
level for the JMS DB is low. Typically this is applicable when you are running 
with the default DB, Hypersonic which is not recommended for production 
deployments. 




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