You can edit the run.bat and set the JAVA_HOME as follows (see the line marked 
in bold):

@echo off
  | rem 
-------------------------------------------------------------------------
  | rem JBoss Bootstrap Script for Win32
  | rem 
-------------------------------------------------------------------------
  | 
  | rem $Id: run.bat 63249 2007-05-30 13:20:25Z [EMAIL PROTECTED] $
  | 
  | @if not "%ECHO%" == ""  echo %ECHO%
  | @if "%OS%" == "Windows_NT"  setlocal
  | 
  | set JAVA_HOME=C:\jdk1.5.0_07
  | 
  | set DIRNAME=.\
  | if "%OS%" == "Windows_NT" set DIRNAME=%~dp0%
  | set PROGNAME=run.bat
  | if "%OS%" == "Windows_NT" set PROGNAME=%~nx0%
  | 

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