I try to explain what i know:

J2EE is basically a specification that estabilish how to construct web 
application but not only.

Application Server like Jboss, WebSphere, Tomcat and others are compliant to 
J2EE.

Framework like Struts or Spring help you to configure and develop web 
application based on servlet which are some of the basically element which j2ee 
web application relies on.

To understand better how they works i suggest this article which starts from 
some definition of a j2ee application:

http://www.springframework.org/docs/MVC-step-by-step/Spring-MVC-step-by-step.html

I hope that it can help you.

Diego

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