I also experiment deadlocks, but they occur each time (and only these times) I 
want to take a transition leading to a node that has already been visited. It 
happens on the commit when I want to close the JBPMSession. I'm using Jbpm 
3.0.2, mysql-connector-java 3.0.11 and mysql 4.1.18 . 

Here is a part of the logs:
anonymous wrote : 17:54:24,984 WARN  JDBCExceptionReporter : SQL Error: 1205, 
SQLState: 41000
  | 17:54:24,984 ERROR JDBCExceptionReporter : Lock wait timeout exceeded; try 
restarting transaction
  | 17:54:24,984 ERROR AbstractFlushingEventListener : Could not synchronize 
database state with session
  | org.hibernate.exception.GenericJDBCException: Could not execute JDBC batch 
update
  |         at 
org.hibernate.exception.SQLStateConverter.handledNonSpecificException(SQLStateConverter.java:91)
  |         at 
org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:79)
  |         at 
org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
  |         at 
org.hibernate.jdbc.AbstractBatcher.executeBatch(AbstractBatcher.java:200)
  |         at 
org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:230)
  |         at 
org.hibernate.engine.ActionQueue.executeActions(ActionQueue.java:141)
  |         at 
org.hibernate.event.def.AbstractFlushingEventListener.performExecutions(AbstractFlushingEventListener.java:296)
  |         at 
org.hibernate.event.def.DefaultFlushEventListener.onFlush(DefaultFlushEventListener.java:27)
  |         at org.hibernate.impl.SessionImpl.flush(SessionImpl.java:877)
  |         at org.jbpm.db.JbpmSession.commitTransaction(JbpmSession.java:102)
Any idea where it might be coming from ? 

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