The index is stored under: 
C:\jboss-4.0.3SP1\server\default\data\portal\cms\conf\workspaces\default\index

The configuration for the index is under:
C:\projects\jboss-portal-2.4\core\src\resources\portal-cms-sar\META-INF\jboss-service.xml

It may be commented out - not sure why yet.

You may want to read this article, as it talks a bit about XPATH and search: 
http://www.artima.com/lejava/articles/contentrepository3.html

I have not looked too deep in to search functionality in jackrabbit, so this is 
all i have to go on right now.

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