HI,
I use the @Index annotation (org.hibernate.annotations.Index) for create index 
if I set in persistence.xml:

property name="hibernate.hbm2ddl.auto" value="create-drop"
work!

not work with:
property name="hibernate.hbm2ddl.auto" value="update"

This is a bug? Exists a solution?

Configuration:
jboss 4.0.4.GA, MySQL 5.0.18.

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