I'm not sure about the multiple breakpoints part but I believe problem
with breakpoints not being actually deleted is a known bug.  I recall a
message from Paul Kinnican to the effect that he knew about it and was
planning to fix it.  I work around it by starting a new emacs instance
when I want to debug so that it doesn't remember all the zombie
breakpoints from the last session.

Lea Anthony wrote:
> 
> Hi,
> 
> Here's an interesting one...  If I am in the middle of a debug session
> and remove a breakpoint, jdebug will remove it, but it will operate as
> if it's still there. I know it's not because there are multiple
> breakpoints on that line because I've checked. Anyone else get this?
> 
> -Lea.

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