Unticking the 'Show all CVS Output' box sets the '-Q' flag on the CVS command; e.g. "cvs -Q up ..." but doesn't hide anything that is returned by CVS (i.e the filtering is done by the CVS server based on the presence of this flag, not be Jenkins). The messages you see during CVS actions are also generated by the CVS Server so you should see the same output in Jenkins as you do in a command line client if all the options are the same.

I'll do a bit more investigation as to why -Q on rlog is preventing changelog generation (and presumably polling).

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