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- [JIRA] (JENKINS-16226) Tools.jar is not included... [email protected] (JIRA)
- [JIRA] (JENKINS-16226) Tools.jar is not inc... [email protected] (JIRA)
- [JIRA] (JENKINS-16226) Tools.jar is not inc... [email protected] (JIRA)
- [JIRA] (JENKINS-16226) Tools.jar is not inc... [email protected] (JIRA)
- [JIRA] (JENKINS-16226) Tools.jar is not inc... [email protected] (JIRA)

According to your output JAVA_HOME seems to point to an JRE instead of a JDK:
java.home = /var/lib/jenkins/tools/hudson.model.JDK/Sun_JDK/jre
This seems more like a configuration problem than a bug. Please use the users mailing list for such issues.