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We recently setup a Jenkins server for the first time and just after getting everything configured this bug hit us. It is affecting all our matrix build jobs (each with 2 or 3 axis). On Windows Server 2008 R2.
This basically renders Jenkins useless for us atm unfortunately. Any fixes or workarounds would be appreciated.
Update: I have found that if I repeatedly "Reload Configuration from Disk" I will eventually end up with all jobs loaded.