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I am also seeing this error on 1.500 as well.
I am using the Subversion plugin and the issue is intermittent.
Here is an excerpt of the error logs from the windows slave:
11/02/2013 3:39:39 PM hudson.util.jna.Kernel32Utils load
SEVERE: Failed to load Kernel32
java.lang.NoClassDefFoundError: Could not initialize class com.sun.jna.Native
at hudson.util.jna.Kernel32Utils.load(Kernel32Utils.java:85)
at hudson.util.jna.Kernel32.<clinit>(Kernel32.java:37)
at hudson.util.jna.Kernel32Utils.getWin32FileAttributes(Kernel32Utils.java:76)
at hudson.util.jna.Kernel32Utils.isJunctionOrSymlink(Kernel32Utils.java:80)
at hudson.Util.isSymlink(Util.java:322)
at hudson.Util.deleteRecursive(Util.java:283)
at hudson.Util.deleteContentsRecursive(Util.java:204)
at hudson.scm.subversion.CheckoutUpdater$1.perform(CheckoutUpdater.java:75)
at hudson.scm.subversion.WorkspaceUpdater$UpdateTask.delegateTo(WorkspaceUpdater.java:153)
at hudson.scm.SubversionSCM$CheckOutTask.perform(SubversionSCM.java:903)
at hudson.scm.SubversionSCM$CheckOutTask.invoke(SubversionSCM.java:884)
at hudson.scm.SubversionSCM$CheckOutTask.invoke(SubversionSCM.java:867)
at hudson.FilePath$FileCallableWrapper.call(FilePath.java:2348)
at hudson.remoting.UserRequest.perform(UserRequest.java:118)
at hudson.remoting.UserRequest.perform(UserRequest.java:48)
at hudson.remoting.Request$2.run(Request.java:326)
at hudson.remoting.InterceptingExecutorService$1.call(InterceptingExecutorService.java:72)
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
at java.util.concurrent.FutureTask.run(FutureTask.java:138)
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
at hudson.remoting.Engine$1$1.run(Engine.java:60)
at java.lang.Thread.run(Thread.java:662)