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I got my error at fetch, not clone. I keep my workspace between builds and let git do a clean, so no need for cloning.
From my 1.2.0-output above I get the log-output
Fetching changes from 2 remote Git repositories
@ https://github.com/jenkinsci/git-plugin/blob/master/src/main/java/hudson/plugins/git/GitSCM.java#L966
and then goes into the fetch for-loop @ https://github.com/jenkinsci/git-plugin/blob/master/src/main/java/hudson/plugins/git/GitSCM.java#L971
where I for the second repo get the error-output
ERROR: Problem fetching from tcm_repo / tcm_repo - could be unavailable. Continuing anyway
[stacktrace]
@ https://github.com/jenkinsci/git-plugin/blob/master/src/main/java/hudson/plugins/git/GitSCM.java#L796 .