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On further investigation, the commit message is the issue:
I am using git-tf to send from my git repo to tfs. I had --metadata set to true. This converts your git commit messages like "blah" to something like:
"Commit abcdef (Tue May 21 14:19:15 2013 +1000)
Author: David Clark <david.clark@[redacted].com>
Committer: David Clark <david.clark@[redacted].com>
-----------------------------------------------------------------
blah
"
Which is causing the parse error in the polling. (Due to "---" it seems).
BTW: for anyone with a repo in this state you can fix it by:
1. git tf configure --no-metadata
2. push a change OR using team explorer, edit the last change set comment to not contain "---"