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This would, for sure, be a gain in flexibility. I completely agree with you.
... but what I don't want is to give administrators the power to shoot themselves in the foot.
To my POV, syncing an entire directory is not recommended.
Since Jenkins is storing everyting in XML files, you'll often have lots of noise brought by lots of unneeded xml files in file hierarchies.
It was the idea behind manual includes : target only important specific files that would be backed up.
I know this is my personal POV which is not obviously shared by everyone![]()
I'll consider adding the exclude list someday, but it's not on the top of my todolist right now.