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I got the same issue on my maschine (jenkins as WAR on tomcat6 on opensuse). After a lot of research we found JENKINS-18578. Jenkins will create a JAR cache in the home directory of the user running tomcat. The home of tomcat6 on opensuse is /usr/share/tomcat6 in my case, but the owner is root, so tomcat cannot create any files or directories here.
I've create a .jenkins directory manually and changed the owner to tomcat, now everything is working again. Maybe this helps.