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I am seeing something similar to Dennys and Matthias under 1.538 running on Ubuntu 12.04. JENKINS_HOME is set to /var/lib/jenkins and Jenkins is started with the argument --webroot=/var/cache/jenkins/war but Jetty extracts jenkins.war to /tmp/jetty-0.0.0.0-8080-jenkins.war--any-/webapp. It runs fine for awhile but then some process deletes most of the files under the webapp directory (oddly the directories are not deleted). I tried setting the environment variable JETTY_HOME=$JENKINS_HOME but the war file is still extracted to /tmp. Is there a way to get Jetty to extract it to somewhere other than /tmp?