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I believe I'm seeing the same problem (or a related problem) on Windows 2003 systems using Jenkins's credential-storing, once I updated the git-client plugin to 1.5.0. (A .gitcredentials file is mentioned in the error message, but There's no such file on the machine that I know of.)
Cloning the remote Git repository
Cloning repository https://github.com/merchantwarehouse/merchantware.git
Fetching upstream changes from https://github.com/merchantwarehouse/merchantware.git
using .gitcredentials to set credentials
ERROR: Error cloning remote repo 'origin'
hudson.plugins.git.GitException: Command "git config --local --remove-section credential.helper" returned status code 128:
stdout:
stderr: fatal: No such section!
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:1098)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:1075)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandIn(CliGitAPIImpl.java:930)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.launchCommandWithCredentials(CliGitAPIImpl.java:993)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl.access$200(CliGitAPIImpl.java:68)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$1.execute(CliGitAPIImpl.java:217)
at org.jenkinsci.plugins.gitclient.CliGitAPIImpl$2.execute(CliGitAPIImpl.java:349)
at hudson.plugins.git.GitSCM.retrieveChanges(GitSCM.java:828)
at hudson.plugins.git.GitSCM.checkout(GitSCM.java:861)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1414)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:652)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:88)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:561)
at hudson.model.Run.execute(Run.java:1678)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:231)
ERROR: null