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We are facing the same issue (on Linux as original reporter).
The same stacktrace as above.
Jan 01, 2014 7:05:37 PM jenkins.model.PeepholePermalink updateCache WARNING: Failed to update hudson.model.FreeStyleProject@6d5d2cc[prototype load] lastStableBuild permalink for prototype load t2mg0i1lkvibf4v07yw184j0m0j6yk2m-1383593938@qa-9 8prototype-1.na.getgooddata.com java.nio.file.NoSuchFileException: /var/lib/jenkins/jobs/prototype load/builds/lastStableBuild.tmp at sun.nio.fs.UnixException.translateToIOException(UnixException.java:86) at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:102) at sun.nio.fs.UnixException.rethrowAsIOException(UnixException.java:107) at sun.nio.fs.UnixFileSystemProvider.readSymbolicLink(UnixFileSystemProvider.java:495) at java.nio.file.Files.readSymbolicLink(Files.java:1382) at sun.reflect.GeneratedMethodAccessor41.invoke(Unknown Source) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at hudson.Util.resolveSymlink(Util.java:1216) at jenkins.model.PeepholePermalink.writeSymlink(PeepholePermalink.java:169) at jenkins.model.PeepholePermalink.updateCache(PeepholePermalink.java:137) at jenkins.model.PeepholePermalink$RunListenerImpl.onCompleted(PeepholePermalink.java:214) at hudson.model.listeners.RunListener.fireCompleted(RunListener.java:199) at hudson.model.Run.execute(Run.java:1642) at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:46) at hudson.model.ResourceController.execute(ResourceController.java:88) at hudson.model.Executor.run(Executor.java:237)