I'm also seeing this in 1.549:

Feb 4, 2014 9:10:08 AM com.cloudbees.jenkins.GitHubPushTrigger$1 run
INFO: SCM changes detected in xwiki-platform. Triggering  #4954
Feb 4, 2014 9:10:28 AM hudson.remoting.Channel$2 handle
SEVERE: Failed to execute command Pipe.EOF(9) (channel agent-2-2)
java.lang.NullPointerException
        at hudson.remoting.ProxyWriter$EOF.execute(ProxyWriter.java:177)
        at hudson.remoting.Channel$2.handle(Channel.java:461)
        at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:60)Feb 4, 2014 9:10:28 AM hudson.remoting.Channel$2 handle
SEVERE: This command is created here
Command Pipe.EOF(9) created at        at hudson.remoting.Command.<init>(Command.java:67)
        at hudson.remoting.Command.<init>(Command.java:50)
        at hudson.remoting.ProxyWriter$EOF.<init>(ProxyWriter.java:169)        at hudson.remoting.ProxyWriter.close(ProxyWriter.java:124)
        at hudson.remoting.ProxyWriter.finalize(ProxyWriter.java:132)
        at java.lang.ref.Finalizer.invokeFinalizeMethod(Native Method)
        at java.lang.ref.Finalizer.runFinalizer(Finalizer.java:83)
        at java.lang.ref.Finalizer.access$100(Finalizer.java:14)        at java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:172)
Feb 4, 2014 9:10:31 AM hudson.remoting.Channel$2 handle
SEVERE: Failed to execute command Pipe.EOF(9) (channel agent-2-3)
java.lang.NullPointerException
        at hudson.remoting.ProxyWriter$EOF.execute(ProxyWriter.java:177)
        at hudson.remoting.Channel$2.handle(Channel.java:461)
        at hudson.remoting.SynchronousCommandTransport$ReaderThread.run(SynchronousCommandTransport.java:60)
Feb 4, 2014 9:10:31 AM hudson.remoting.Channel$2 handle
SEVERE: This command is created here
Command Pipe.EOF(9) created at
        at hudson.remoting.Command.<init>(Command.java:67)
        at hudson.remoting.Command.<init>(Command.java:50)
        at hudson.remoting.ProxyWriter$EOF.<init>(ProxyWriter.java:169)
        at hudson.remoting.ProxyWriter.close(ProxyWriter.java:124)
        at hudson.remoting.ProxyWriter.finalize(ProxyWriter.java:132)
        at java.lang.ref.Finalizer.invokeFinalizeMethod(Native Method)
        at java.lang.ref.Finalizer.runFinalizer(Finalizer.java:83)
        at java.lang.ref.Finalizer.access$100(Finalizer.java:14)
...

Is it a problem? What can I do?

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