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I've run into this as well. It has something to do with concurrent msys processes. I've reported my findings to the msys and msysgit mailing lists. I haven't had time to really dig into it and figure out what's going on.
I've done a few things to try and work around the issue:
def print_exec_corrupt_check(args): """Prints a command to be executed and then executes it """ cmdline = " ".join(args)print "============================================================" print "Exec:", cmdline print sys.stdout.flush() # Add an environment check before the command cmdline = r'if [ ! -r "$HOME" ]; then echo "Corrupt environment detected, aborting..."; exit 1; fi; ' + cmdline subprocess.check_call([r'C:\Program Files (x86)\Git\bin\bash.exe', r'-c', cmdline], bufsize=-1) print sys.stdout.flush()Possible future workarounds: