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The commit mentioned only fixes Mac OSX, however I have also seen this issue on CentOS 6 (or probably any other Linux or Unix) with tmpwatch installed. I would strongly recommend defaulting to /var/run/jenkins or something similar, across all *nix like OS's. You can currently either edit /etc/default/jenkins to change the tmpdir (similar to the commit), or edit /etc/cron.daily/tmpwatch to exclude it as @akiko_pusu mentioned above.