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Getting a very similar stack trace with Jenkins 1.555, ubuntu, Java 1.7.0_40, Tomcat 7.0.52:
apr 12, 2014 4:34:12 EM jenkins.diagnosis.HsErrPidList <init> WARNING: Failed to list up hs_err_pid files java.lang.Error: Failed to create temporary file for jnidispatch library: java.io.IOException: No such file or directory at com.sun.jna.Native.loadNativeLibraryFromJar(Native.java:735) at com.sun.jna.Native.loadNativeLibrary(Native.java:674) at com.sun.jna.Native.<clinit>(Native.java:115) at com.sun.akuma.CLibrary.<clinit>(CLibrary.java:89) at com.sun.akuma.JavaVMArguments.resolvePID(JavaVMArguments.java:126) at com.sun.akuma.JavaVMArguments.ofLinux(JavaVMArguments.java:114) at com.sun.akuma.JavaVMArguments.of(JavaVMArguments.java:104) at com.sun.akuma.JavaVMArguments.current(JavaVMArguments.java:92) at jenkins.diagnosis.HsErrPidList.<init>(HsErrPidList.java:62) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:57) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:45) at java.lang.reflect.Constructor.newInstance(Constructor.java:526) at com.google.inject.internal.DefaultConstructionProxyFactory$1.newInstance(DefaultConstructionProxyFactory.java:86) at com.google.inject.internal.ConstructorInjector.provision(ConstructorInjector.java:108) at com.google.inject.internal.ConstructorInjector.construct(ConstructorInjector.java:88) at com.google.inject.internal.ConstructorBindingImpl$Factory.get(ConstructorBindingImpl.java:269) at com.google.inject.internal.ProviderToInternalFactoryAdapter$1.call(ProviderToInternalFactoryAdapter.java:46) at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1058) at com.google.inject.internal.ProviderToInternalFactoryAdapter.get(ProviderToInternalFactoryAdapter.java:40) at com.google.inject.Scopes$1$1.get(Scopes.java:65) at hudson.ExtensionFinder$GuiceFinder$FaultTolerantScope$1.get(ExtensionFinder.java:429) at com.google.inject.internal.InternalFactoryToProviderAdapter.get(InternalFactoryToProviderAdapter.java:41) at com.google.inject.internal.InjectorImpl$3$1.call(InjectorImpl.java:1005) at com.google.inject.internal.InjectorImpl.callInContext(InjectorImpl.java:1051) at com.google.inject.internal.InjectorImpl$3.get(InjectorImpl.java:1001) at hudson.ExtensionFinder$GuiceFinder._find(ExtensionFinder.java:391) at hudson.ExtensionFinder$GuiceFinder.find(ExtensionFinder.java:382) at hudson.ExtensionFinder._find(ExtensionFinder.java:151) at hudson.ClassicPluginStrategy.findComponents(ClassicPluginStrategy.java:316) at hudson.ExtensionList.load(ExtensionList.java:295) at hudson.ExtensionList.ensureLoaded(ExtensionList.java:248) at hudson.ExtensionList.iterator(ExtensionList.java:138) at hudson.ExtensionList.get(ExtensionList.java:129) at hudson.diagnosis.NullIdDescriptorMonitor.verifyId(NullIdDescriptorMonitor.java:86) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:606) at hudson.init.TaskMethodFinder.invoke(TaskMethodFinder.java:105) at hudson.init.TaskMethodFinder$TaskImpl.run(TaskMethodFinder.java:169) at org.jvnet.hudson.reactor.Reactor.runTask(Reactor.java:282) at jenkins.model.Jenkins$7.runTask(Jenkins.java:899) at org.jvnet.hudson.reactor.Reactor$2.run(Reactor.java:210) at org.jvnet.hudson.reactor.Reactor$Node.run(Reactor.java:117) at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1145) at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:615) at java.lang.Thread.run(Thread.java:724)