To fix this issue, you can add this groovy script between the Fitnesse tests execution and the Fitnesse publish result report step. It create a new result file.

def head = 0
def lines = new File( 'fitnesse_tmp_result.xml' ).readLines()
lines = lines.findAll{ line ->
  if (line == '<?xml version="1.0"?>') head++
  return head == 1
}

new File( 'fitnesse_result.xml' ).withWriter { w ->
  lines.each{ line ->
    w.write(line + '\n')
  }
}
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