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tfnico Could you explain further how you configure Jenkins to allow a private key with a passphrase to work with the git plugin? You said that "Private key in the text field works fine for me, both with and without passphrase", yet when I've added a credential to Jenkins using a private key which requires a passphrase, even if I enter the passphrase, I'm not able to use that private key based credential from the git plugin to checkout a repository whose access is controlled by that private key.
The steps I took in my failed attempt included:
( sudo useradd private )
( sudo su - private; ssh-keygen )
( git config --global user.name "Private User"; git config --global user.email mwaite@wheezy64b )
( cd .ssh; git init; git add .; git commit -m "First checkin" )
( cd ~; git clone --bare .ssh ssh.git )
( cd ~/.ssh;git remote add origin ../ssh.git;git branch --set-upstream master origin/ )
( cd ~/.ssh; cp id_rsa.pub authorized_keys )
( eval $(ssh-agent); ssh-add; ssh wheezy64b ls .ssh )