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Ok sorry, correction to what I said above, yes it is related to the above commit but the issue appears to be that (line 454) in the other call to parseIvyDescriptorFiles(...) it's only called if project.isIncrementalBuild() is set. So therefore in the advanced section if you have "Incremental build" and "build modules as separate jobs" UNCHECKED, it appears parseIvyDescriptorFiles() would never be called.
I can confirm if you simply check "Incremental build", dependencies now get calculated and downstream jobs start triggering. However I'm not sure why you'd really want to check this option if you don't 'build modules as separate jobs'?