I've tried using the "2.5-beta-3-SNAPSHOT (private-06/30/2014 16:31-jenkins)" version of the plugin to no avail. I'm still seeing the issue with the substr call for the supposed "added check." It's looking like the context is not being setup properly for each module or the url and repoUrl are incorrect. Anyway, here is the stack trace:

FATAL: String index out of range: -5
java.lang.StringIndexOutOfBoundsException: String index out of range: -5
at java.lang.String.substring(String.java:1949)
at java.lang.String.substring(String.java:1916)
at hudson.scm.DirAwareSVNXMLLogHandler.sendToHandler(DirAwareSVNXMLLogHandler.java:111)
at hudson.scm.DirAwareSVNXMLLogHandler.handleLogEntry(DirAwareSVNXMLLogHandler.java:82)
at org.tmatesoft.svn.core.internal.wc2.compat.SvnCodec$7.receive(SvnCodec.java:167)
at org.tmatesoft.svn.core.internal.wc2.compat.SvnCodec$7.receive(SvnCodec.java:164)
at org.tmatesoft.svn.core.wc2.SvnReceivingOperation.receive(SvnReceivingOperation.java:78)
at org.tmatesoft.svn.core.internal.wc2.remote.SvnRemoteLog.handleLogEntry(SvnRemoteLog.java:199)
at org.tmatesoft.svn.core.internal.io.svn.SVNRepositoryImpl.logImpl(SVNRepositoryImpl.java:827)
at org.tmatesoft.svn.core.io.SVNRepository.log(SVNRepository.java:1035)
at org.tmatesoft.svn.core.internal.wc2.remote.SvnRemoteLog.run(SvnRemoteLog.java:181)
at org.tmatesoft.svn.core.internal.wc2.remote.SvnRemoteLog.run(SvnRemoteLog.java:35)
at org.tmatesoft.svn.core.internal.wc2.SvnOperationRunner.run(SvnOperationRunner.java:20)
at org.tmatesoft.svn.core.wc2.SvnOperationFactory.run(SvnOperationFactory.java:1238)
at org.tmatesoft.svn.core.wc2.SvnOperation.run(SvnOperation.java:294)
at org.tmatesoft.svn.core.wc.SVNLogClient.doLog(SVNLogClient.java:967)
at org.tmatesoft.svn.core.wc.SVNLogClient.doLog(SVNLogClient.java:872)
at hudson.scm.SubversionChangeLogBuilder.buildModule(SubversionChangeLogBuilder.java:184)
at hudson.scm.SubversionChangeLogBuilder.run(SubversionChangeLogBuilder.java:123)
at hudson.scm.SubversionSCM.calcChangeLog(SubversionSCM.java:740)
at hudson.scm.SubversionSCM.checkout(SubversionSCM.java:875)
at hudson.scm.SCM.checkout(SCM.java:488)
at hudson.model.AbstractProject.checkout(AbstractProject.java:1252)
at hudson.model.AbstractBuild$AbstractBuildExecution.defaultCheckout(AbstractBuild.java:624)
at jenkins.scm.SCMCheckoutStrategy.checkout(SCMCheckoutStrategy.java:86)
at hudson.model.AbstractBuild$AbstractBuildExecution.run(AbstractBuild.java:530)
at hudson.model.Run.execute(Run.java:1732)
at hudson.model.FreeStyleBuild.run(FreeStyleBuild.java:43)
at hudson.model.ResourceController.execute(ResourceController.java:88)
at hudson.model.Executor.run(Executor.java:234)

And the svn paths (yes, two seperate paths into two separate modules) that are being checked out with the alphabetic characters all swapped for A/a...

svn+ssh://aaaaaaaaaa/aaa/aaa/AAAA_Aaaaaaaa/aaaaaaaa/Aaaaaaaaaaa_Aaaaaa/AaaaaaAaaaaaaaaaaAaaaaaaaa@69274
svn+ssh://aaaaaaaaaa/aaa/aaa/AA/aaaaa/AAAA_Aaaaaaaa/Aaaaaaaa@HEAD

And the line of code that is failing...

String relativeWorkspacePath = context.moduleWorkspacePath + path.getPath().substring(context.url.length() - context.repoUrl.length());

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