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I just rechecked with this latest plugin and it works fine on Ubuntu 14.04 and Git 1.9.1. Furthermore, Git 2.1.0 also works fine.
I would go to System Log -> add a Log recorder for "hudson.plugins.scm_sync_configuration". It should be more obvious what the issue is on your system.
Yes, Java 6. Also you can skip setting the parent version (leave it) since there are dependencies going from Hudson to Jenkins.